Changes between Version 35 and Version 36 of SOPs/chip_seq_peaks

Timestamp:

10/07/16 09:04:18 (9 years ago)

Author:

gbell

Comment:

--

SOPs/chip_seq_peaks

@@ -5 +5 @@
  * For each sample map the reads to the appropriate genome (eg.using Bowtie2).
  * Call peaks (eg. MACS).  Peaks can be called without control, however, it's highly recommended a control was used in the experimental design, eg. IgG or input, input is preferred over IgG.
+ * Note that quality control is important after read mapping and after peak calling.  The ENCODE consortium recommends some [[https://genome.ucsc.edu/ENCODE/qualityMetrics.html quality metrics]].
 
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