Changes between Version 37 and Version 38 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
04/27/17 08:00:03 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/chip_seq_peaks

    v37 v38  
    88
    99=== Reviews ===
    10 [[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0011471|Evaluation of ChIP-Seq performance]] Wilbanks EG, and Facciotti MT (2010; PLoS ONE)
    11 
    12 [[http://nar.oxfordjournals.org/content/early/2010/11/25/nar.gkq1187.abstract?etoc|A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs]] (NAR Nov. 2010)
    13 
    14 [[https://www.encodeproject.org/documents/108d2515-c053-4b18-bc65-27e8f26d62c5/@@download/attachment/MethylC-SeqStandards_ENCODE3_EM.pdf|ENCODE and modENCODE Guidelines For Experiments Generating ChIP [...] Genome Wide Location Data]]
     10[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0011471 Evaluation of ChIP-Seq performance] Wilbanks EG, and Facciotti MT (2010; PLoS ONE)
     11
     12[http://nar.oxfordjournals.org/content/early/2010/11/25/nar.gkq1187.abstract?etoc A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs] (NAR Nov. 2010)
     13
     14[http://genome.cshlp.org/content/22/9/1813.full ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia] (Genome Research, 2012)
    1515
    1616=== Step 1: Map reads ===