Changes between Version 73 and Version 74 of SOPs/chip_seq_peaks

Timestamp:

11/08/21 11:33:56 (3 years ago)

Author:

thiruvil

Comment:

--

SOPs/chip_seq_peaks

@@ -235 +235 @@
       * --nomodel and --extsize can be used after strand cross-correlation [see above]
 
-
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+Called peaks should be filtered based on FDR, e.g. q < 0.1, and other metrics, e.g. fold enrichment.  If CUT&RUN samples had low coverage, e.g. less than ~3 million reads, [[https://github.com/FredHutch/SEACR|SEACR]] may be an alternative to MACS to call peaks.
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