Changes between Version 75 and Version 76 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
11/09/21 10:12:27 (3 years ago)
Author:
thiruvil
Comment:

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  • SOPs/chip_seq_peaks

    v75 v76  
    232232      * -g hs or mm
    233233      * –p 1e-5
    234       * --keep-dup all, unless very high coverage or duplication rates
    235         * note: MACS2 default is 1, i.e. keep one tag
     234      * --keep-dup all
     235        * note: MACS2 default is 1, i.e. keep one tag; high duplication rates in CUT&RUN may be due poor data quality, see [[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1802-4 | CUT&RUNTools]]
    236236      * --nomodel and --extsize can be used after strand cross-correlation [see above]
    237237