Changes between Version 77 and Version 78 of SOPs/chip_seq_peaks

Timestamp:

11/09/21 10:24:10 (3 years ago)

Author:

thiruvil

Comment:

--

SOPs/chip_seq_peaks

@@ -236 +236 @@
       * --nomodel and --extsize can be used after strand cross-correlation [see above]
 
-Called peaks should be filtered based on FDR, e.g. q < 0.1, and other metrics, e.g. fold enrichment.  If CUT&RUN samples had low coverage, e.g. less than ~3 million reads, [[https://github.com/FredHutch/SEACR|SEACR]] may be an alternative to MACS to call peaks.
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+Called peaks should be filtered based on FDR, e.g. -log,,10,,(FDR) > 10, and other metrics, e.g. fold enrichment.  If CUT&RUN samples had low coverage, e.g. less than ~3 million reads, [[https://github.com/FredHutch/SEACR|SEACR]] may be an alternative to MACS to call peaks.
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