Changes between Version 7 and Version 8 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
05/14/14 12:55:27 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/chip_seq_peaks

    v7 v8  
    6666SISSRs uses strand bimodality to try to find the summit of the peak. The summit should be very close to the DNA bound by the TF.  It is more appropriate for TFs because they tend to bind in specific narrow regions.
    6767
    68 Map with Bowtie, use --sam parameter to get a sam ouput file
     68Map with Bowtie, use --sam parameter to get a SAM output file
    6969{{{
    7070bsub "bowtie -t -m 3 -n 3 -l 36 --strata --best --solexa1.3-quals --sam inputSeq bowtieOutput.sam"