Changes between Version 79 and Version 80 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
11/09/21 14:06:05 (3 years ago)
Author:
thiruvil
Comment:

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  • SOPs/chip_seq_peaks

    v79 v80  
    194194
    195195  * Method 1: Run IDR to identify reproducible peaks
    196   * Method 2: Use [[https://github.com/taoliu/MACS/wiki/Call-differential-binding-events | MACS2 bdgdiff]] to call differential binding.  bedGraph (.bdg) files are required.
     196  * Method 2: Use [[https://github.com/taoliu/MACS/wiki/Call-differential-binding-events | MACS2 bdgdiff]] to call differential binding.  bedGraph (.bdg) files are required which can be created using the "-B" option without "--SPMR" option.
    197197  * Method 3: Intersect bound regions (peaks)
    198198    * This binary comparison asks simply, "Is each peak in sample A present in sample B (and vice versa)?"