Changes between Version 2 and Version 3 of SOPs/coordinates


Ignore:
Timestamp:
12/18/14 15:58:58 (10 years ago)
Author:
byuan
Comment:

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  • SOPs/coordinates

    v2 v3  
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    218   * To check how reads were stranded for strand-specific RNA-seq data, you can use infer_experiment.py from  [http://rseqc.sourceforge.net/ RSeQC]
    219 
     218  * To check how reads were stranded for strand-specific RNA-seq data, you can run infer_experiment.py from  [http://rseqc.sourceforge.net/ RSeQC] or visit [http://barcwiki.wi.mit.edu/wiki/SOPs/miningSAMBAM BaRC SOP: SAM/BAM summarizing, processing and quality control(QC)]
    220219{{{
    221220infer_experiment.py -r mm9.refseq.bed12 -i accepted_hits.bam