Changes between Version 5 and Version 6 of SOPs/coordinates

Timestamp:

10/02/18 12:48:44 (6 years ago)

Author:

gbell

Comment:

--

SOPs/coordinates

@@ -63 +63 @@
  
 === Convert bam to bigwig ===
+
+Method 1: Single-base resolution
 {{{
   Step1: convert bam to bedGraph format:
@@ -71 +73 @@
     where mm9.size file is tab delimited and structured as follows:
         <chromName><TAB><chromSize>
+}}}
+Method 1: Resolution of desired window size (after creating windows across genome)
+{{{
+coverageBed -a Human.hg19.1000.500.bed -b Sample_1.sorted.bam | cut -f1-4 > Sample_1.1000.500.coverage.bedgraph
 }}}