Changes between Version 6 and Version 7 of SOPs/coordinates

Timestamp:

10/02/18 12:49:40 (6 years ago)

Author:

gbell

Comment:

--

SOPs/coordinates

@@ -64 +64 @@
 === Convert bam to bigwig ===
 
-Method 1: Single-base resolution
+Method 1: Single-base resolution across the genome
 {{{
   Step1: convert bam to bedGraph format:
@@ -74 +74 @@
         <chromName><TAB><chromSize>
 }}}
-Method 1: Resolution of desired window size (after creating windows across genome)
+Method 2: Resolution of desired window size (after creating windows across desired regions or genome)
 {{{
 coverageBed -a Human.hg19.1000.500.bed -b Sample_1.sorted.bam | cut -f1-4 > Sample_1.1000.500.coverage.bedgraph