Changes between Version 1 and Version 2 of SOPs/diff_microarry

Timestamp:

01/25/13 09:46:37 (12 years ago)

Author:

gbell

Comment:

--

SOPs/diff_microarry

@@ -26 +26 @@
  }}}
   
-For other examples of design: [[http://iona.wi.mit.edu/bio/bioinfo/Rscripts/miRNA_1color_arrays.txt|Affy]] and [[http://iona.wi.mit.edu/bio/bioinfo/Rscripts/Affy_design_1_GB.txt|Agilent]]
+For other examples of design: [[http://jura.wi.mit.edu/bio/scripts/R/miRNA_1color_arrays.txt|Affy]] and [[http://jura.wi.mit.edu/bio/scripts/R/Affy_design_1_GB.txt|Agilent]]
 
 Fit linear model
@@ -65 +65 @@
  
 
-Another Example: [[http://iona.wi.mit.edu/bio/bioinfo/Rscripts/Affy_hairpin_analysis_GB.R | Affy_hairpin_analysis_GB.R ]]
+Another Example: [[http://jura.wi.mit.edu/bio/scripts/R/Affy_hairpin_analysis_GB.R | Affy_hairpin_analysis_GB.R ]]
 
 === Other Issues  ===
@@ -79 +79 @@
   * "The fold changes and significant tests in this list are corrected for dye-effects. Including the dye-effect in the model in this way uses up one degree of freedom which might otherwise be used to estimate the residual variability, but it is valuable if many genes show non-negligible dye-effects."
 
-For more information, see the third session of [http://iona.wi.mit.edu/bio/education/R2011/ | An introduction to R and Bioconductor: A BaRC Short Course]
+For more information, see the third session of [http://jura.wi.mit.edu/bio/education/R2011/ | An introduction to R and Bioconductor: A BaRC Short Course]