Changes between Version 1 and Version 2 of SOPs/enriched_tf_binding_sites


Ignore:
Timestamp:
06/12/13 10:25:43 (12 years ago)
Author:
thiruvil
Comment:

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  • SOPs/enriched_tf_binding_sites

    v1 v2  
    88
    99==== MEME ====
    10 Is based on expectation maximization (deterministic optimization).
     10Based on expectation maximization (deterministic optimization).  Spurious motifs can be reduced by filtering the input sequences, for example based on fold enrichment and/or reducing the sequence length (eg. ~200bp regions within the summit) from MACS for TFs in ChIP-Seq data.
    1111
    1212Sample commands: