Changes between Version 2 and Version 3 of SOPs/enriched_tf_binding_sites


Ignore:
Timestamp:
06/24/13 10:19:27 (12 years ago)
Author:
thiruvil
Comment:

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  • SOPs/enriched_tf_binding_sites

    v2 v3  
    8888[[http://trap.molgen.mpg.de/cgi-bin/home.cgi | TF Affinity Prediction (TRAP)]], uses binding affinities to predict association between TF and co-regulated genes. [[http://bioinformatics.oxfordjournals.org/content/25/4/435.full|PASTAA: identifying transcription factors associated with sets of co-regulated genes]]
    8989
     90
     91===== RSA-Tools: Peak-motifs =====
     92[[http://rsat.ulb.ac.be/peak-motifs_form.cgi| RSA-Tools: Peak-motifs]], discover motifs in ChIP-Seq peak sequences.
     93
    9094=== Scan for TFBS using known motifs  ===
    91951. Source of the Motifs: