Changes between Version 4 and Version 5 of SOPs/genome_regions_annotations


Ignore:
Timestamp:
11/22/16 14:28:28 (8 years ago)
Author:
thiruvil
Comment:

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Legend:

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  • SOPs/genome_regions_annotations

    v4 v5  
    108108 {{{
    109109# Default output based on Ensembl gene annotation
    110 snpEff hg19 < snps.calls.vcf 1> snps.calls.out.txt 2> snps.calls.err.txt
     110snpEff GRCh37.75 < snps.calls.vcf 1> snps.calls.out.txt 2> snps.calls.err.txt
    111111# Default output based on UCSC gene annotation
    112112snpEff hg19 < snps.calls.vcf 1> snps.calls.out.txt 2> snps.calls.err.txt
    … …  
    115115{{{
    116116# Don't show so much stuff
    117 snpEff -no-downstream -no-intergenic -no-intron -no-upstream hg19 < snps.calls.vcf 1> snps.calls.filt.out.txt 2> snps.calls.filt.err.txt
     117snpEff -no-utr -no-downstream -no-intergenic -no-intron -no-upstream hg19 < snps.calls.vcf 1> snps.calls.filt.out.txt 2> snps.calls.filt.err.txt
    118118}}}
    119119