Changes between Version 11 and Version 12 of SOPs/go_annotation

Timestamp:

04/22/20 17:59:47 (5 years ago)

Author:

ibarrasa

Comment:

--

SOPs/go_annotation

@@ -24 +24 @@
 java -Xmx512m -cp /usr/lib/share/gsea2/gsea2-2.2.2.jar xtools.gsea.GseaPreranked -gmx gseaftp.broadinstitute.org://pub/gsea/gene_sets/h.all.v5.2.symbols.gmt -collapse false -mode Max_probe -norm meandiv -nperm 1000 -rnk ./MY_COMPARISON.rnk -scoring_scheme weighted -rpt_label GSEA_out_v1 -chip gseaftp.broadinstitute.org://pub/gsea/annotations/GENE_SYMBOL.chip -include_only_symbols true -make_sets true -plot_top_x 20 -rnd_seed timestamp -set_max 500 -set_min 2 -zip_report false -out GSEA_OUT.TEST_v1 -gui false
 }}}
-
-   === Fast gene set enrichment analysis (fgsea) ===
+   ==== Fast gene set enrichment analysis (fgsea) ====
 [https://bioconductor.org/packages/release/bioc/vignettes/fgsea/inst/doc/fgsea-tutorial.html/ fgsea]
    ==== Unranked List ====