Changes between Version 24 and Version 25 of SOPs/go_annotation


Ignore:
Timestamp:
09/29/20 14:09:23 (4 years ago)
Author:
gbell
Comment:

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  • SOPs/go_annotation

    v24 v25  
    3838}}}
    3939     * Notice that in our system ''gseacli'' points to ''gsea-cli.sh''. If you download your own version of GSEA you will have to run gsea-cli.sh   
    40    ==== Unranked List ====
     40
     41   ==== Traditional GSEA ====
    4142 
    42 Traditional GSEA
    43 
    4443  1.  Create necessary files in correct format for expression, phenotype and chip annotation ([[http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Using_RNA-seq_Datasets_with_GSEA | see GSEA wiki]])
    4544  1.  Use MSigDB for gene sets or create custom gene sets in correct format