Changes between Version 6 and Version 7 of SOPs/go_annotation


Ignore:
Timestamp:
05/04/17 16:00:43 (8 years ago)
Author:
thiruvil
Comment:

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  • SOPs/go_annotation

    v6 v7  
    3434  1.  Run GSEA, use default options to start
    3535
     36   ==== Single-sample GSEA (ssGSEA) ====
     37  An extension of GSEA that can be used to determine enrichment of gene sets in individual samples.
     38
     39  [[ http://rowley.mit.edu/caw_web/ssGSEAProjection/ssGSEA_caw_BIG_120314.pptx | ssGSEA Presentation from MIT BMC ]]
     40
     41  [[ http://software.broadinstitute.org/webservices/gpModuleRepository/download/prod/module/?file=/ssGSEAProjection/broad.mit.edu:cancer.software.genepattern.module.analysis/00270/7.6/ssGSEAProjection.zip | Broad's ssGSEA from GenePattern R/jar script]]
     42
    3643=== BiNGO ===
    3744[[http://chianti.ucsd.edu/cyto_web/plugins/displayplugininfo.php?name=BiNGO|BiNGO Plugin]] \\