Changes between Version 3 and Version 4 of SOPs/gzipping


Ignore:
Timestamp:
11/19/13 10:17:49 (11 years ago)
Author:
gbell
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SOPs/gzipping

    v3 v4  
    2323gunzip -c fastq/My_sample.noVec.qgt20.2.fq.gz | fastq_quality_trimmer -v -t 20 -l 30 -z -o fastq/My_sample.noVec.qgt20.t.2.fq.gz \\
    2424
    25 # After trimming, get reads that are still paired (and output as regular fastq) \\
     25# After trimming, get reads that are still paired (and output as regular fastq for next (bowtie) step) \\
    2626/nfs/BaRC_Public/BaRC_code/Perl/cmpfastq/cmpfastqgz.pl fastq/My_sample.noVec.qgt20.t.1.fq.gz fastq/My_sample.noVec.qgt20.t.2.fq.gz
    2727