Changes between Version 6 and Version 7 of SOPs/gzipping


Ignore:
Timestamp:
06/30/16 08:54:25 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/gzipping

    v6 v7  
    44tar -xOzf /lab/solexa_public/LAB/RUN/QualityScore/Foo.1.tar.gz | gzip -f > fastq/My_sample.1.fq.gz \\
    55tar -xOzf /lab/solexa_public/LAB/RUN/QualityScore/Foo.2.tar.gz | gzip -f > fastq/My_sample.2.fq.gz \\
     6
     7# [Whitehead fastq files only] Untar from solexa_public, gunzip, remove WI GTC-specific header suffixes and gzip \\
     8tar -xOzf /lab/solexa_public/LAB/RUN/QualityScore/Foo.1.tar.gz | /nfs/BaRC_Public/BaRC_code/Perl/rm_WI_Illumina_suffix/rm_WI_Illumina_suffix.STDIN.pl | gzip -f > fastq/My_sample.1.fq.gz \\
     9tar -xOzf /lab/solexa_public/LAB/RUN/QualityScore/Foo.2.tar.gz | /nfs/BaRC_Public/BaRC_code/Perl/rm_WI_Illumina_suffix/rm_WI_Illumina_suffix.STDIN.pl | gzip -f > fastq/My_sample.2.fq.gz \\
    610
    711# Run FastQC \\