Changes between Version 1 and Version 2 of SOPs/mapping


Ignore:
Timestamp:
06/12/13 09:12:54 (12 years ago)
Author:
gbell
Comment:

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  • SOPs/mapping

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    11
    22== Mapping short reads ==
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     5== Regular mappers ==
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     7These mapping tools are useful for reads of DNA origin that should map to a continuous stretch of genomic DNA.  Some of these tools can tolerate short indels but they're not designed for reads that span a splice junction
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     9One may choose between bowtie version 1 (faster but ignores indels) and bowtie version 2 (slower but allows indels).
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     11
     12== Splice-aware mappers ==