Changes between Version 22 and Version 23 of SOPs/mapping


Ignore:
Timestamp:
07/31/15 09:13:49 (9 years ago)
Author:
thiruvil
Comment:

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  • SOPs/mapping

    v22 v23  
    3232'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml bowtie version 2]'''
    3333
    34 Bowtie 2 was designed as an improvement to bowtie 1.  See the first [http://bowtie-bio.sourceforge.net/bowtie2/faq.shtml bowtie2 FAQ] for how they differ.  Early versions of bowtie 2 had some issues, but these seem to have been fixed.  Bowtie 2 uses a different set of genome index files (*.bt2) than bowtie 1 (*.ebwt).  Bowtie 2 works with indels.
     34Bowtie 2 was designed as an improvement to bowtie 1, specifically, it supports gapped alignment.  See the first [http://bowtie-bio.sourceforge.net/bowtie2/faq.shtml bowtie2 FAQ] for how they differ.  Early versions of bowtie 2 had some issues, but these seem to have been fixed.  Bowtie 2 uses a different set of genome index files (*.bt2) than bowtie 1 (*.ebwt).  Bowtie 2 works with indels.
    3535
    3636Sample command: