Changes between Version 27 and Version 28 of SOPs/mapping


Ignore:
Timestamp:
05/27/16 15:50:32 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/mapping

    v27 v28  
    144144Sample command:
    145145{{{
     146# Single-end reads
    146147bsub tophat -o s_7_tophat_out --phred64-quals --segment-length 20 -I 200000 -G /nfs/genomes/mouse_gp_jul_07_no_random/gtf/Mus_musculus.NCBIM37.67_noNT.gtf --no-novel-juncs /nfs/genomes/mouse_gp_jul_07_no_random/bowtie/mm9 s_7.txt
     148# Paired-end reads
     149bsub tophat -o s_7_tophat_out --phred64-quals --segment-length 20 -I 200000 -G /nfs/genomes/mouse_gp_jul_07_no_random/gtf/Mus_musculus.NCBIM37.67_noNT.gtf --no-novel-juncs /nfs/genomes/mouse_gp_jul_07_no_random/bowtie/mm9 s_7.1.txt s_7.2.txt
    147150}}}
    148151