Changes between Version 35 and Version 36 of SOPs/mapping


Ignore:
Timestamp:
02/22/17 14:31:18 (8 years ago)
Author:
thiruvil
Comment:

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  • SOPs/mapping

    v35 v36  
    2323
    2424Note that a fastq file is about 4-5x larger than its corresponding SRA file.
     25
     26As of fastq-dump version 2.8.1, running fastq-dump will require the vdb-config to be setup correctly.  By default, downloaded/cache file is copied to the user home director which is likely to run out of space.  Run ''vdb-config -i'' and use the GUI to enter a different location.  Manually editing the file, $HOME/.ncbi/user-settings.mkfg, doesn't seem to work.  See [[https://ncbi.github.io/sra-tools/install_config.html | NCBI SRA Installation/Config]]
    2527
    2628== Mapping short reads ==