Changes between Version 3 and Version 4 of SOPs/mapping

Timestamp:

06/12/13 09:31:55 (12 years ago)

Author:

gbell

Comment:

--

SOPs/mapping

@@ -7 +7 @@
 These mapping tools are useful for reads of DNA origin that should map to a continuous stretch of genomic DNA.  Some of these tools can tolerate short indels but they're not designed for reads that span a splice junction
 
-One may choose between bowtie version 1 (faster but ignores indels) and bowtie version 2 (slower but allows indels).
+One may choose between bowtie version 1 (faster but ignores indels) and bowtie version 2 (slower but allows indels).  For a feature comparision, see [http://bowtie-bio.sourceforge.net/bowtie2/faq.shtml How is Bowtie 2 different from Bowtie 1?]
 
 '''[http://bowtie-bio.sourceforge.net/index.shtml bowtie version 1]'''
@@ -26 +26 @@
 To see other parameters log into tak and type '''bowtie''' 
 
+
+'''[http://bowtie-bio.sourceforge.net/bowtie2/index.shtml bowtie version 2]'''
+
 == Splice-aware mappers ==