Changes between Version 43 and Version 44 of SOPs/mapping


Ignore:
Timestamp:
05/05/17 10:10:53 (8 years ago)
Author:
thiruvil
Comment:

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  • SOPs/mapping

    v43 v44  
    219219  * '''--runThreadN <n> ''' Specifies the number of threads to use.
    220220  * '''--sjdbOverhang  ''' Specifies the length of the genomic sequence around the annotated junction to be used in constructing the splice junctions database.  For short reads (<50) use readLength - 1, otherwise a generic value of 100 will work as well (see manual for more info).
     221
     222
     223== Others ==
     224
     225  * [[http://ccb.jhu.edu/software/hisat2/index.shtml | HISAT2]]: successor of TopHat2/HISAT
     226