Changes between Version 61 and Version 62 of SOPs/mapping


Ignore:
Timestamp:
01/23/19 15:48:40 (6 years ago)
Author:
thiruvil
Comment:

--

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  • SOPs/mapping

    v61 v62  
    134134  * '''--outSAMtype <BAM sortingMode> ''' Specifies the type of BAM file to create.  Options: 'BAM Unsorted', 'BAM SortedByCoordinate', 'BAM Unsorted SortedByCoordinate' (to create both unsorted and sorted BAMs)
    135135
     136  * '''Optional
     137    * '''--alignIntronMax''' default is set to (2^winBinNbits^)*winAnchorDistNbins or approx 590K.  Decrease intron size for smaller genomes (e.g. yeast)
     138
    136139
    137140'''STAR 2-Pass alignment method.'''