Changes between Version 64 and Version 65 of SOPs/mapping


Ignore:
Timestamp:
07/08/19 13:40:04 (6 years ago)
Author:
gbell
Comment:

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  • SOPs/mapping

    v64 v65  
    138138  * '''Optional
    139139    * '''--alignIntronMax''' sets the maximum intron size where the default is (2^winBinNbits^)*winAnchorDistNbins or approx 590K.  Decrease the intron size for small genomes (e.g. yeast)
     140    * To turn off soft-clipping, add "'''--alignEndsType EndToEnd'''" to your command.
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