Changes between Version 70 and Version 71 of SOPs/mapping


Ignore:
Timestamp:
01/29/21 17:36:25 (4 years ago)
Author:
thiruvil
Comment:

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  • SOPs/mapping

    v70 v71  
    160160    * '''--alignIntronMax''' sets the maximum intron size where the default is (2^winBinNbits^)*winAnchorDistNbins or approx 590K.  Decrease the intron size for small genomes (e.g. yeast)
    161161    * To turn off soft-clipping, add "'''--alignEndsType EndToEnd'''" to your command.
     162    * '''--outFilterMultimapNmax''' sets the maximum number of multiple alignments, the default is 10.
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