Changes between Version 72 and Version 73 of SOPs/mapping

Timestamp:

09/10/21 21:06:41 (3 years ago)

Author:

thiruvil

Comment:

--

SOPs/mapping

@@ -158 +158 @@
   * '''Optional
     * '''--alignIntronMax''' sets the maximum intron size where the default is (2^winBinNbits^)*winAnchorDistNbins or approx 590K.  Decrease the intron size for small genomes (e.g. yeast)
+
+    ||'''Genome(annotation)'''||'''Intron Size (99^th^ Percentile Intron Size)'''||
+    || Human (GRCh38.101) || 104052 ||
+    || Mouse (GRCm38.91) || 77207 ||
     * To turn off soft-clipping, add "'''--alignEndsType EndToEnd'''" to your command.
     * '''--outFilterMultimapNmax''' sets the maximum number of multiple alignments, the default is 10.