Changes between Version 76 and Version 77 of SOPs/mapping


Ignore:
Timestamp:
03/28/22 12:29:59 (3 years ago)
Author:
thiruvil
Comment:

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  • SOPs/mapping

    v76 v77  
    157157
    158158  * '''Optional
    159     * '''--alignIntronMax''' sets the maximum intron size where the default is (2^winBinNbits^)*winAnchorDistNbins or approx 590K.  Decrease the intron size for small genomes (e.g. yeast)
     159    * '''--alignIntronMax''' sets the maximum intron size where the default is (2^winBinNbits^)*winAnchorDistNbins or approx 590K when finding novel splice junctions.  Decrease the intron size for small genomes (e.g. yeast).  Also see [[https://github.com/alexdobin/STAR/wiki/FAQ:-Options-and-Parameters | STAR FAQ: Options and Parameters]]
    160160
    161161    ||'''Genome(annotation)'''||'''Intron Size (99^th^ Percentile)'''||