Changes between Version 1 and Version 2 of SOPs/miningSAMBAM


Ignore:
Timestamp:
03/20/13 13:59:14 (12 years ago)
Author:
gbell
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SOPs/miningSAMBAM

    v1 v2  
    2525Both foo.sorted.bam and foo.sorted.bam.bai are needed for visualization.
    2626 }}} 
     27
     28=== Count the number of mapped reads ===
     29
     30{{{
     31samtools flagstat mapped_unmapped.bam
     32}}}
    2733
    2834=== Count the number of mapped reads by chromosome ===