Changes between Version 30 and Version 31 of SOPs/miningSAMBAM


Ignore:
Timestamp:
08/06/15 14:07:17 (9 years ago)
Author:
thiruvil
Comment:

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Legend:

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  • SOPs/miningSAMBAM

    v30 v31  
    145145
    146146#rnaseq qc
    147 bsub "qualimap rnaseq -bam myFile.bam -gtf Homo_sapiens.GRCh37.72.canonical.gtf -outdir output_qualimap_rnaseq -protocol non-strand-specific"
     147bsub "qualimap rnaseq -bam myFile.bam -gtf Homo_sapiens.GRCh37.72.canonical.gtf -outdir output_qualimap_rnaseq -p non-strand-specific"
    148148
    149149#counts qc (after using htseq-count or similar program to generate a matrix of counts)