Changes between Version 35 and Version 36 of SOPs/miningSAMBAM


Ignore:
Timestamp:
12/19/16 11:50:25 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/miningSAMBAM

    v35 v36  
    8686}}}
    8787
     88=== Keep only properly paired reads ===
     89
     90
     91{{{
     92samtools view -hS -f 2 mapped_unmapped.sam > mapped.properly_paired.sam
     93}}}
     94
    8895
    8996=== How many multiple/uniquely mapped reads are in a bam/sam file? ===