Changes between Version 43 and Version 44 of SOPs/miningSAMBAM

Timestamp:

09/21/20 13:48:27 (4 years ago)

Author:

gbell

Comment:

--

SOPs/miningSAMBAM

@@ -214 +214 @@
 bam2bed < Mapped_reads.bam > Mapped_reads.bam
 }}}
+
+=== Convert BAM back to fastq format ===
+
+bamToFastq is part of the bedtools suite.
+
+{{{
+# Single-end reads
+bamToFastq -i Reads.bam -fq Reads.fq
+# Paired-end reads
+bamToFastq -i Read_pairs.bam -fq Reads.R1.fq -fq2 Reads.R2.fq
+}}}
+