Changes between Version 45 and Version 46 of SOPs/miningSAMBAM


Ignore:
Timestamp:
10/23/20 11:28:52 (4 years ago)
Author:
gbell
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SOPs/miningSAMBAM

    v45 v46  
    225225}}}
    226226
     227=== Get genome coverage of DNA reads ===
     228
     229One way to do this is with a [http://qualimap.conesalab.org/doc_html/analysis.html BAM QC] analysis using  the [http://qualimap.conesalab.org/ QualiMap] package.
     230
     231{{{
     232qualimap bamqc -bam Mapped_DNA_reads.bam -outdir qualimap_output
     233}}}