Changes between Version 46 and Version 47 of SOPs/miningSAMBAM


Ignore:
Timestamp:
10/23/20 11:48:12 (4 years ago)
Author:
gbell
Comment:

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  • SOPs/miningSAMBAM

    v46 v47  
    231231{{{
    232232qualimap bamqc -bam Mapped_DNA_reads.bam -outdir qualimap_output
    233 }}}
     233# Command-line execution may require disabling X-windows
     234bsub "unset DISPLAY; qualimap bamqc -bam Mapped_DNA_reads.bam -outdir qualimap_output"
     235}}}
     236
     237For genome coverage, search for "mean coverageData" in the output file: qualimap_output/genome_results.txt  This file includes lots of other details too.