Changes between Version 4 and Version 5 of SOPs/miningSAMBAM


Ignore:
Timestamp:
07/25/13 09:36:05 (12 years ago)
Author:
gbell
Comment:

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  • SOPs/miningSAMBAM

    v4 v5  
    2424   
    2525Both foo.sorted.bam and foo.sorted.bam.bai are needed for visualization.
    26  }}} 
     26 }}}
     27
     28All three steps (SAM=>BAM, sorting, and indexing) can be merged into one command.  See
     29{{{
     30/nfs/BaRC_Public/BaRC_code/Perl/SAM_to_BAM_sort_index/SAM_to_BAM_sort_index.pl
     31}}}
    2732
    2833=== Process a BAM file into another BAM file ===