Changes between Version 1 and Version 2 of SOPs/multipleSequenceAlignment


Ignore:
Timestamp:
07/28/16 12:46:26 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/multipleSequenceAlignment

    v1 v2  
    66== Start with sequences from a database ==
    77
    8 Useful alignment algorithms - available on the web, for desktop computers, for linux systems
     8Useful alignment algorithms - available on the web, for desktop computers, and for Linux systems
    99
    10 [http://www.drive5.com/muscle/ muscle][[BR]]
     10[http://www.drive5.com/muscle/ muscle]   '''muscle -in MySeqs.fa -out MySeqs.aligned.fa''' [[BR]]
    1111
    12 [http://www.tcoffee.org/ t_coffee][[BR]]
     12[http://www.tcoffee.org/ t_coffee]    '''t_coffee MySeqs.fa''' [will create MySeqs.aln] [[BR]]
    1313
    14 [http://mafft.cbrc.jp/alignment/software/ mafft]
     14[http://mafft.cbrc.jp/alignment/software/ mafft]  '''mafft --auto MySeqs.fa > MySeqs.aligned.fa''' [[BR]]
    1515
    1616The output from these programs can then be visualized in [http://www.clustal.org/ ClustalX] or [http://www.jalview.org/download Jalview].