Changes between Version 1 and Version 2 of SOPs/normalize_ma

Timestamp:

01/25/13 09:42:13 (12 years ago)

Author:

gbell

Comment:

--

SOPs/normalize_ma

@@ -224 +224 @@
 ====  Other Issues   ====
 
-  * Some genes may be represented by multiple probes.  To get a unique value for each gene, median (recommended), mean, or maximum value of the probes should be determined.  See, [[http://iona.wi.mit.edu/bio/bioinfo/Rscripts/makeNonRedundantGeneMatrix.R]] and [[http://iona.wi.mit.edu/bio/bioinfo/Rscripts/makeNonRedundantProbeMatrix.R]]
+  * Some genes may be represented by multiple probes.  To get a unique value for each gene, median (recommended), mean, or maximum value of the probes should be determined.  See, [[http://jura.wi.mit.edu/bio/scripts/R/makeNonRedundantGeneMatrix.R]] and [[http://jura.wi.mit.edu/bio/scripts/R/makeNonRedundantProbeMatrix.R]]
 
   * Spot flags can be used to define spot weights, which are taken into consideration for normalization and/or statistics, such as with commands like
@@ -244 +244 @@
 
   * [[http://jura.wi.mit.edu/bio/education/bioinfo2007/arrays/ | BaRC Course Notes: Microarray Analysis ]]
-  * [[http://iona.wi.mit.edu/bio/education/R2011/ | An introduction to R and Bioconductor: A BaRC Short Course ]]
-
+  * [[http://jura.wi.mit.edu/bio/education/R2011/ | An introduction to R and Bioconductor: A BaRC Short Course ]]
+