Changes between Version 3 and Version 4 of SOPs/normalize_ma


Ignore:
Timestamp:
02/26/13 10:29:40 (12 years ago)
Author:
thiruvil
Comment:

--

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  • SOPs/normalize_ma

    v3 v4  
    149149    library(gcrma)
    150150    # Normalize with GCRMA where CEL files are in the directory CEL_Files
    151     eset = justGCRMA(celfile.path = "CEL_Files", verbose=T, cdfname="mouse4302mmentrez")
     151    eset = justGCRMA(celfile.path = "CEL_Files", verbose=T, cdfname="mouse4302mmentrezg")
    152152    # Get the expression values alone (as a matrix)
    153153    eset.rma.expr = exprs(eset)