Changes between Version 5 and Version 6 of SOPs/normalize_ma


Ignore:
Timestamp:
04/11/13 11:53:30 (12 years ago)
Author:
ibarrasa
Comment:

--

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  • SOPs/normalize_ma

    v5 v6  
    3737    library(limma)
    3838    scanFiles = dir(pattern = ".*.txt$")
    39     maData = read.maimages(scanFiles, source="agilent")
     39    maData = read.maimages(scanFiles, source="agilent", green.only=TRUE)
    4040    eSet = new("ExpressionSet", exprs = maData$E, annotation =maData$genes[,7])
    4141    arrayQualityMetrics(eSet, outdir="QC", force = TRUE, do.logtransform = TRUE)