Changes between Version 13 and Version 14 of SOPs/qc_SRA


Ignore:
Timestamp:
06/22/23 13:43:28 (19 months ago)
Author:
gbell
Comment:

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Legend:

Unmodified
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  • SOPs/qc_SRA

    v13 v14  
    7171wget https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR002/626/SRR1234567/SRR1234567.sralite.1
    7272
    73 # Convert sralite to fastq
    74 fastq-dump --split-files -A SRR1234567 SRR1234567.sralite.1
     73# Convert sralite to fastq.gz
     74fastq-dump --split-files --gzip -A SRR1234567 SRR1234567.sralite.1
    7575}}}
    7676