Changes between Version 5 and Version 6 of SOPs/qc_SRA


Ignore:
Timestamp:
08/25/20 11:53:14 (5 years ago)
Author:
gbell
Comment:

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  • SOPs/qc_SRA

    v5 v6  
    1111=== Downloading and processing one NCBI SRA sample at a time ===
    1212
    13 NCBI short-read files can be downloaded
    14   * in SRA format for subsequent conversion, or
    15   * and converted to fastq.gz format at the same time (recommended)
     13NCBI short-read files can be
     14  * downloaded in SRA format for subsequent conversion, or
     15  * downloaded and converted to fastq.gz format at the same time (recommended)
    1616
    1717To download one SRR ID at a time to get fastq.gz format, use the command fastq-dump, like