Changes between Version 8 and Version 9 of SOPs/qc_SRA

Timestamp:

08/26/20 08:57:31 (5 years ago)

Author:

gbell

Comment:

--

SOPs/qc_SRA

@@ -52 +52 @@
 }}}
 
-In the event of problems downloading and converting to fastq.gz all at once, SRA files can be downloaded by navigating through the SRA web site to the sample's "Data access" tab, which provides direct links to the files.  Using this direct path to the SRA file,
+In the event of problems downloading and converting to fastq.gz all at once, SRA files can be downloaded by navigating through the SRA web site to the sample's "Data access" tab, which provides direct links to the file(s).  Using this direct path to the SRA file,
 {{{
-# Use 'wget' for download
+# Use 'wget' for download reads in SRA format
 wget -O SRR123456.sra https://sra-downloadb/path_to_file/SRR123456/SRR123456.1
-# Convert SRA to fastq.gz
+# Convert SRA format to fastq.gz
 fastq-dump --split-3 --gzip ./SRR123456.sra
 }}}