Changes between Version 9 and Version 10 of SOPs/rna-seq-diff-expressions

Timestamp:

08/23/13 10:21:49 (11 years ago)

Author:

gbell

Comment:

--

SOPs/rna-seq-diff-expressions

@@ -96 +96 @@
     * Unless otherwise noted, these statistical analyses require raw counts, not RPKM values, as input.
     * To prepare the data for analysis, make a counts matrix (as a tab-delimited text file) with genes as rows and samples as columns.
-    * Some statistical tests or packages can be applied to non-replicated data (but must be interpreted with caution):
+    * Some statistical tests or packages can be applied to non-replicated data (but must be interpreted with a high degree of caution):
        * [[http://cufflinks.cbcb.umd.edu/manual.html#cuffdiff|cuffDiff]] (part of the cufflinks package; uses BAM files as input)
        * [[http://www.bioconductor.org/packages/release/bioc/html/DESeq.html|DESeq]] [wiki:SOPs/rna-seq-diff-expressions/DESeq | More detail about DESeq]