Changes between Version 21 and Version 22 of SOPs/rna-seq-diff-expressions


Ignore:
Timestamp:
09/11/14 15:59:30 (10 years ago)
Author:
gbell
Comment:

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  • SOPs/rna-seq-diff-expressions

    v21 v22  
    114114
    115115 * **Accounting for a batch effect in a differential expression model**
    116     * With [[http://www.bioconductor.org/packages/release/bioc/html/edgeR.html|edgeR]], the comparison can be adjusted for differences between batches (such as date of sample preparation) with an addictive model formula using the equation
     116    * With [[http://www.bioconductor.org/packages/release/bioc/html/edgeR.html|edgeR]], the comparison can be adjusted for differences between batches (such as date of sample preparation) with an addictive model formula using an equation like
    117117
    118118  '''design = model.matrix(~Batch+Treatment)'''.