Changes between Version 27 and Version 28 of SOPs/rna-seq-diff-expressions


Ignore:
Timestamp:
02/03/16 10:05:49 (9 years ago)
Author:
thiruvil
Comment:

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  • SOPs/rna-seq-diff-expressions

    v27 v28  
    121121
    122122 * **Accounting for a batch effect in a differential expression model**
    123     * With [[http://www.bioconductor.org/packages/release/bioc/html/edgeR.html|edgeR]], the comparison can be adjusted for differences between batches (such as date of sample preparation) with an addictive model formula using an equation like
     123    * With [[http://www.bioconductor.org/packages/release/bioc/html/edgeR.html|edgeR]], the comparison can be adjusted for differences between batches (such as date of sample preparation) with an additive model formula using an equation like
    124124
    125125  '''design = model.matrix(~Batch+Treatment)'''.