Changes between Version 33 and Version 34 of SOPs/rna-seq-diff-expressions

Timestamp:

12/02/16 11:46:20 (8 years ago)

Author:

gbell

Comment:

--

SOPs/rna-seq-diff-expressions

@@ -162 +162 @@
     {{{
     cpm.out=cpm(my.DGEList)
-    logCPM <- removeBatchEffect(cpm.out, batch=batch)  #where batch is based on your design
+    # Input needs to be log-transformed values
+    logCPM <- removeBatchEffect(log2(cpm.out), batch=batch)  #where batch is based on your design
     }}}