Changes between Version 42 and Version 43 of SOPs/rna-seq-diff-expressions

Timestamp:

05/17/17 10:57:28 (8 years ago)

Author:

thiruvil

Comment:

--

SOPs/rna-seq-diff-expressions

@@ -72 +72 @@
     * **NOTE:**
       * Both htseq-count and featureCounts ignore multi-mapped reads (ie. these will not get counted) by default.  In featureCounts use -M option to count multi-mapped reads, if needed.
-      * Summary stats reported on reads/features counted by both htseq-count (at the bottom of output file) and featureCounts is with respect to number of records (ie. lines) in the bam file, to summarize per read further parsing may be needed: extra information can be obtained from i) htseq-count use -o option and ii) featureCounts use -R option.
+      * Summary stats reported on reads/features are counted in both htseq-count (at the bottom of output file) and featureCounts is with respect to number of records (ie. lines) in the bam file, to summarize per read further parsing/processing may be needed: extra information can be obtained from i) htseq-count use -o option and ii) featureCounts use -R option.