Changes between Version 43 and Version 44 of SOPs/rna-seq-diff-expressions

Timestamp:

05/17/17 13:47:34 (8 years ago)

Author:

thiruvil

Comment:

--

SOPs/rna-seq-diff-expressions

@@ -72 +72 @@
     * **NOTE:**
       * Both htseq-count and featureCounts ignore multi-mapped reads (ie. these will not get counted) by default.  In featureCounts use -M option to count multi-mapped reads, if needed.
-      * Summary stats reported on reads/features are counted in both htseq-count (at the bottom of output file) and featureCounts is with respect to number of records (ie. lines) in the bam file, to summarize per read further parsing/processing may be needed: extra information can be obtained from i) htseq-count use -o option and ii) featureCounts use -R option.
+      * Summary metrics reported in both htseq-count and featureCounts is with respect to number of records (ie. lines) in the bam file, to summarize by reads further parsing/processing may be needed: extra information can be obtained from i) htseq-count use -o option and ii) featureCounts use -R option.